3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGAGUACG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2G_035 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.0591
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

4W2G|1|AA|G|887
4W2G|1|AA|G|888
4W2G|1|AA|A|889
4W2G|1|AA|G|890
4W2G|1|AA|U|891
4W2G|1|AA|A|892
4W2G|1|AA|C|893
4W2G|1|AA|G|894
*
4W2G|1|AA|U|905
4W2G|1|AA|G|906
4W2G|1|AA|A|907
4W2G|1|AA|A|908
4W2G|1|AA|A|909
4W2G|1|AA|C|910

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AL
30S Ribosomal Protein S12
Chain AQ
30S Ribosomal Protein S17

Coloring options:


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