IL_4W2G_072

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGGAC*GUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_072 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.2474

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

4W2G|1|BA|C|297
4W2G|1|BA|G|298
4W2G|1|BA|G|299
4W2G|1|BA|A|302
4W2G|1|BA|C|303
*
4W2G|1|BA|G|385
4W2G|1|BA|U|386
4W2G|1|BA|G|387

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains