IL_4W2G_104

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4W2G|1|BA|U|1256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_104 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0383

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4W2G|1|BA|C|1253
4W2G|1|BA|G|1254
4W2G|1|BA|A|1255
4W2G|1|BA|U|1256
4W2G|1|BA|G|1257
4W2G|1|BA|A|1258
4W2G|1|BA|A|1259
4W2G|1|BA|G|1260
*
4W2G|1|BA|U|1280
4W2G|1|BA|G|1281
4W2G|1|BA|G|1282
4W2G|1|BA|A|1283
4W2G|1|BA|G|1284

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BU

50S Ribosomal Protein L20