IL_4W2G_108

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_108 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0537

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

4W2G|1|BA|G|1365
4W2G|1|BA|C|1366
4W2G|1|BA|A|1367
4W2G|1|BA|A|1368
4W2G|1|BA|U|1369
*
4W2G|1|BA|A|1377
4W2G|1|BA|G|1378
4W2G|1|BA|C|1379

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BW

50S Ribosomal Protein L22

Chain BX

50S Ribosomal Protein L23