IL_4W2G_134
3D structure
- PDB id
- 4W2G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 4W2G|1|BA|A|1960, 4W2G|1|BA|U|1966, 4W2G|1|BA|U|1985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2G_134 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.1126
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
4W2G|1|BA|C|1956
4W2G|1|BA|G|1957
4W2G|1|BA|A|1958
4W2G|1|BA|A|1959
4W2G|1|BA|A|1960
4W2G|1|BA|U|1961
4W2G|1|BA|U|1962
4W2G|1|BA|C|1963
4W2G|1|BA|C|1964
4W2G|1|BA|U|1965
4W2G|1|BA|U|1966
4W2G|1|BA|G|1967
*
4W2G|1|BA|C|1983
4W2G|1|BA|C|1984
4W2G|1|BA|U|1985
4W2G|1|BA|G|1986
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AW
- Transfer RNA; tRNA
- Chain BD
- 50S Ribosomal Protein L2
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