IL_4W2G_143

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_143 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3206

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4W2G|1|BA|G|2146
4W2G|1|BA|G|2147
4W2G|1|BA|A|2148
4W2G|1|BA|G|2149
*
4W2G|1|BA|C|2183
4W2G|1|BA|G|2184
4W2G|1|BA|C|2185
4W2G|1|BA|C|2186
4W2G|1|BA|G|2187
4W2G|1|BA|G|2188
4W2G|1|BA|U|2189
4W2G|1|BA|G|2190
4W2G|1|BA|A|2191
4W2G|1|BA|A|2192
4W2G|1|BA|A|2193
4W2G|1|BA|U|2194
4W2G|1|BA|A|2195
4W2G|1|BA|C|2196

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA