IL_4W2G_154

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_154 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.0497

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4W2G|1|BA|C|2478
4W2G|1|BA|C|2479
4W2G|1|BA|G|2480
4W2G|1|BA|A|2481
4W2G|1|BA|G|2482
*
4W2G|1|BA|C|2492
4W2G|1|BA|G|2493
4W2G|1|BA|G|2494
4W2G|1|BA|C|2495
4W2G|1|BA|G|2496

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AW

Transfer RNA; tRNA

Chain B9

50S Ribosomal Protein L36

Chain BQ

50S Ribosomal Protein L16