IL_4W2G_164

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4W2G|1|BA|U|2701, 4W2G|1|BA|C|2702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_164 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0358

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4W2G|1|BA|U|2699
4W2G|1|BA|U|2700
4W2G|1|BA|U|2701
4W2G|1|BA|C|2702
4W2G|1|BA|C|2703
*
4W2G|1|BA|G|2731
4W2G|1|BA|G|2732
4W2G|1|BA|U|2733
4W2G|1|BA|A|2734
4W2G|1|BA|G|2735

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BE

50S Ribosomal Protein L3

Chain BR

50S Ribosomal Protein L17

Chain BT

50S Ribosomal Protein L19