3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CGAUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
4W2G|1|DA|U|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W2G_282 not in the Motif Atlas
Homologous match to IL_7RQB_047
Geometric discrepancy: 0.0599
The information below is about IL_7RQB_047
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.2
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
28

Unit IDs

4W2G|1|DA|C|1208
4W2G|1|DA|G|1209
4W2G|1|DA|A|1210
4W2G|1|DA|U|1211
4W2G|1|DA|G|1212
4W2G|1|DA|A|1213
4W2G|1|DA|A|1214
4W2G|1|DA|G|1215
*
4W2G|1|DA|U|1234
4W2G|1|DA|G|1235
4W2G|1|DA|G|1236
4W2G|1|DA|A|1237
4W2G|1|DA|G|1238

Current chains

Chain DA
23S Ribosomal RNA

Nearby chains

Chain DU
50S Ribosomal Protein L20

Coloring options:


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