IL_4W2G_317

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4W2G|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_317 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0794

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4W2G|1|DA|C|2081
4W2G|1|DA|A|2082
4W2G|1|DA|G|2083
*
4W2G|1|DA|C|2236
4W2G|1|DA|G|2237
4W2G|1|DA|G|2238
4W2G|1|DA|G|2239

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D1

50S Ribosomal Protein L28

Chain DD

50S Ribosomal Protein L2