IL_4W2G_320

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4W2G|1|DA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_320 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3639

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4W2G|1|DA|G|2110
4W2G|1|DA|C|2111
4W2G|1|DA|G|2112
4W2G|1|DA|U|2113
4W2G|1|DA|A|2114
4W2G|1|DA|G|2115
4W2G|1|DA|G|2116
4W2G|1|DA|A|2117
4W2G|1|DA|U|2118
4W2G|1|DA|A|2119
4W2G|1|DA|G|2120
*
4W2G|1|DA|C|2178
4W2G|1|DA|C|2179

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CY

Transfer RNA; tRNA