IL_4W2G_341

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4W2G|1|DA|U|2689, 4W2G|1|DA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_341 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0645

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4W2G|1|DA|U|2687
4W2G|1|DA|U|2688
4W2G|1|DA|U|2689
4W2G|1|DA|C|2690
4W2G|1|DA|C|2691
*
4W2G|1|DA|G|2718
4W2G|1|DA|G|2719
4W2G|1|DA|U|2720
4W2G|1|DA|A|2721
4W2G|1|DA|G|2722

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S Ribosomal Protein L3

Chain DR

50S Ribosomal Protein L17

Chain DT

50S Ribosomal Protein L19