IL_4W2G_352

3D structure

PDB id

4W2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2G_352 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.0561

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4W2G|1|AA|G|673
4W2G|1|AA|G|674
4W2G|1|AA|A|675
4W2G|1|AA|A|676
4W2G|1|AA|U|677
*
4W2G|1|AA|G|713
4W2G|1|AA|G|714
4W2G|1|AA|A|715
4W2G|1|AA|A|716
4W2G|1|AA|C|717

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AF

30S Ribosomal Protein S6

Chain AK

30S Ribosomal Protein S11

Chain AR

30S Ribosomal Protein S18

Chain BD

50S Ribosomal Protein L2