IL_4W2H_035

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_035 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0623

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4W2H|1|AA|G|774
4W2H|1|AA|G|775
4W2H|1|AA|G|776
4W2H|1|AA|A|777
4W2H|1|AA|G|778
*
4W2H|1|AA|U|804
4W2H|1|AA|C|805

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AK

30S Ribosomal Protein S11

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BD

50S Ribosomal Protein L2