IL_4W2H_102
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4W2H|1|BA|U|1072, 4W2H|1|BA|A|1173, 4W2H|1|BA|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2H_102 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0421
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4W2H|1|BA|G|1070
4W2H|1|BA|G|1071
4W2H|1|BA|U|1072
4W2H|1|BA|A|1073
4W2H|1|BA|A|1074
4W2H|1|BA|A|1075
4W2H|1|BA|G|1076
*
4W2H|1|BA|C|1170
4W2H|1|BA|G|1171
4W2H|1|BA|A|1172
4W2H|1|BA|A|1173
4W2H|1|BA|A|1174
4W2H|1|BA|A|1175
4W2H|1|BA|U|1176
4W2H|1|BA|G|1177
4W2H|1|BA|A|1178
4W2H|1|BA|U|1179
4W2H|1|BA|C|1180
4W2H|1|BA|G|1181
4W2H|1|BA|G|1182
4W2H|1|BA|G|1183
4W2H|1|BA|G|1184
4W2H|1|BA|C|1185
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B9
- 50S Ribosomal Protein L36
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain BE
- 50S Ribosomal Protein L3
- Chain BN
- 50S Ribosomal Protein L13
- Chain BQ
- 50S Ribosomal Protein L16
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