IL_4W2H_112

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_112 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.104

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4W2H|1|BA|U|1403
4W2H|1|BA|G|1404
4W2H|1|BA|A|1405
4W2H|1|BA|A|1406
4W2H|1|BA|G|1407
*
4W2H|1|BA|C|1416
4W2H|1|BA|G|1417
4W2H|1|BA|U|1418
4W2H|1|BA|A|1419
4W2H|1|BA|G|1420

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain B7

50S Ribosomal Protein L34

Chain BD

50S Ribosomal Protein L2