IL_4W2H_141

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4W2H|1|BA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_141 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.0556

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4W2H|1|BA|C|2103
4W2H|1|BA|A|2104
4W2H|1|BA|G|2105
*
4W2H|1|BA|C|2248
4W2H|1|BA|G|2249
4W2H|1|BA|G|2250
4W2H|1|BA|G|2251

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B1

50S Ribosomal Protein L28

Chain BD

50S Ribosomal Protein L2