IL_4W2H_183

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_183 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.0672

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4W2H|1|CA|C|132
4W2H|1|CA|U|133
4W2H|1|CA|A|134
4W2H|1|CA|C|135
4W2H|1|CA|C|136
*
4W2H|1|CA|G|227
4W2H|1|CA|A|228
4W2H|1|CA|U|229
4W2H|1|CA|G|230

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CP

30S Ribosomal Protein S16

Chain CT

30S Ribosomal Protein S20