Motif IL_60988.4 Version IL_60988.4 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 2-9 | 3-7 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8VMA_001 | 8VMA | 0.6488 | 0 | C | Enterovirus 5' cloverleaf cis-acting replication element | C | 22 | C | 23 | C | 24 | A | 25 | C | 26 | * | G | 16 | U | 17 | U | 18 | G | 19 | cWW | cWW | ncWW | ncWW | cWW | |||
| 2 | IL_8OI5_009 | 8OI5 | 0.6486 | 0 | 1 | LSU rRNA | G | 161 | U | 162 | A | 163 | U | 164 | C | 165 | * | G | 256 | U | 257 | U | 258 | C | 259 | cWW | cwW | ncWw | cWW | ||||
| 3 | IL_3LOA_001 | 3LOA | 0.3273 | 0 | UAA/GAN related | B+A | RNA (23-mer) | G | 1497 | U | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | C | 1402 | C | 1403 | C | 1404 | cWW | ncWW | cWW | ||||
| 4 | IL_3BNT_002 | 3BNT | 0.2696 | 0 | Tandem non-canonical cWW pairs | A | A site of human mitochondrial ribosome | G | 14||||4_665 | C | 15||||4_665 | A | 16||||4_665 | A | 17||||4_665 | G | 18||||4_665 | * | C | 6 | A | 7 | C | 8 | C | 9 | cWW | ncWB | cWw | cWW | |||
| 5 | IL_3BNR_008 | 3BNR | 0.3111 | 0 | Minor groove platform related | D+C | A site of human mitochondrial ribosome, chain three | G | 13 | C | 14 | A | 15 | A | 16 | G | 17 | * | C | 7 | A | 8 | C | 9 | C | 10 | cWW | ncWw | cWw | cWW | |||
| 6 | IL_9NLN_003 | 9NLN | 0.2746 | 0 | C | RNA (CVB3 IRES Domain V) | C | 97 | U | 98 | A | 99 | C | 100 | U | 101 | * | A | 12 | A | 13 | U | 14 | G | 15 | cWW | cwW | ntHS | cWWa | cWW | |||
| 7 | IL_8B0X_010 | 8B0X | 0.1082 | 0 | Minor groove platform related (H) | A | SSU rRNA | C | 132 | U | 133 | G | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW | ||||
| 8 | IL_4LFB_008 | 4LFB | 0.0000 | 0 | Minor groove platform related (H) | A | SSU rRNA | C | 132 | U | 133 | A | 134 | C | 135 | C | 136 | * | G | 227 | A | 228 | U | 229 | G | 230 | cWW | cwW | cWW | ||||
| 9 | IL_2O3V_002 | 2O3V | 0.4330 | 0 | Decoding loop related | B+A | RNA (23-mer) | A | 38 | A | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW | ||||
| 10 | IL_8B0X_169 | 8B0X | 0.4677 | 0 | Multiple bulged bases with non-canonical cWW (H) | a | LSU rRNA | C | 2874 | U | 2875 | A | 2876 | A | 2877 | C | 2878 | * | G | 2847 | G | 2848 | U | 2849 | G | 2850 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAG*CACC | 2 |
| CCCAC*GUUG | 1 |
| GUAUC*GUUC | 1 |
| GUAAC*GCCC | 1 |
| CUACU*AAUG | 1 |
| CUGCC*GAUG | 1 |
| CUACC*GAUG | 1 |
| AAAAG*CGCU | 1 |
| CUAAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*AC | 2 |
| UAC*AU | 2 |
| CCA*UU | 1 |
| UAU*UU | 1 |
| UAA*CC | 1 |
| UGC*AU | 1 |
| AAA*GC | 1 |
| UAA*GU | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Minor groove platform related (H) (2)
- Decoding loop related (1)
- Minor groove platform related (1)
- Tandem non-canonical cWW pairs (1)
- UAA/GAN related (1)
- Multiple bulged bases with non-canonical cWW (H) (1)
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Heat map statistics
- Min 0.11 | Avg 0.46 | Max 0.94
Coloring options: