IL_4W2H_184

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4W2H|1|CA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_184 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.098

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4W2H|1|CA|G|148
4W2H|1|CA|A|149
4W2H|1|CA|C|150
4W2H|1|CA|A|151
4W2H|1|CA|A|152
4W2H|1|CA|C|153
*
4W2H|1|CA|G|168
4W2H|1|CA|C|169
4W2H|1|CA|U|170
4W2H|1|CA|A|171
4W2H|1|CA|A|172
4W2H|1|CA|U|173
4W2H|1|CA|C|174

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal Protein S20