IL_4W2H_207

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_207 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0717

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4W2H|1|CA|C|779
4W2H|1|CA|A|780
4W2H|1|CA|A|781
4W2H|1|CA|A|782
4W2H|1|CA|C|783
*
4W2H|1|CA|G|799
4W2H|1|CA|G|800
4W2H|1|CA|U|801
4W2H|1|CA|A|802
4W2H|1|CA|G|803

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CK

30S Ribosomal Protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA