IL_4W2H_208
3D structure
- PDB id
- 4W2H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2H_208 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0774
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
4W2H|1|CA|G|887
4W2H|1|CA|G|888
4W2H|1|CA|A|889
4W2H|1|CA|G|890
4W2H|1|CA|U|891
4W2H|1|CA|A|892
4W2H|1|CA|C|893
4W2H|1|CA|G|894
*
4W2H|1|CA|U|905
4W2H|1|CA|G|906
4W2H|1|CA|A|907
4W2H|1|CA|A|908
4W2H|1|CA|A|909
4W2H|1|CA|C|910
Current chains
- Chain CA
- 16S Ribosomal RNA
Nearby chains
- Chain CL
- 30S Ribosomal Protein S12
- Chain CQ
- 30S Ribosomal Protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: