IL_4W2H_306

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_306 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.0682

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4W2H|1|DA|U|1851
4W2H|1|DA|C|1852
4W2H|1|DA|A|1853
4W2H|1|DA|A|1854
4W2H|1|DA|G|1855
*
4W2H|1|DA|C|1887
4W2H|1|DA|G|1888
4W2H|1|DA|A|1889
4W2H|1|DA|A|1890
4W2H|1|DA|G|1891

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CY

Transfer RNA; tRNA