IL_4W2H_318

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2H_318 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.4256

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4W2H|1|DA|G|2124
4W2H|1|DA|G|2125
4W2H|1|DA|A|2126
4W2H|1|DA|G|2127
*
4W2H|1|DA|C|2161
4W2H|1|DA|G|2162
4W2H|1|DA|C|2163
4W2H|1|DA|C|2164
4W2H|1|DA|G|2165
4W2H|1|DA|G|2166
4W2H|1|DA|U|2167
4W2H|1|DA|G|2168
4W2H|1|DA|A|2169
4W2H|1|DA|A|2170
4W2H|1|DA|A|2171
4W2H|1|DA|U|2172
4W2H|1|DA|A|2173
4W2H|1|DA|C|2174

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains