IL_4W2I_035

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_035 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0693

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4W2I|1|AA|G|887
4W2I|1|AA|G|888
4W2I|1|AA|A|889
4W2I|1|AA|G|890
4W2I|1|AA|U|891
4W2I|1|AA|A|892
4W2I|1|AA|C|893
4W2I|1|AA|G|894
*
4W2I|1|AA|U|905
4W2I|1|AA|G|906
4W2I|1|AA|A|907
4W2I|1|AA|A|908
4W2I|1|AA|A|909
4W2I|1|AA|C|910

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AL

30S Ribosomal Protein S12

Chain AQ

30S Ribosomal Protein S17