IL_4W2I_079

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_079 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0591

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

4W2I|1|BA|U|629
4W2I|1|BA|U|630
4W2I|1|BA|A|631
4W2I|1|BA|A|632
4W2I|1|BA|G|633
*
4W2I|1|BA|C|643
4W2I|1|BA|G|644
4W2I|1|BA|G|645
4W2I|1|BA|A|646
4W2I|1|BA|G|647

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BF

50S Ribosomal Protein L4

Chain BP

50S Ribosomal Protein L15