IL_4W2I_145

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_145 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3105

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4W2I|1|BA|G|2146
4W2I|1|BA|G|2147
4W2I|1|BA|A|2148
4W2I|1|BA|G|2149
*
4W2I|1|BA|C|2183
4W2I|1|BA|G|2184
4W2I|1|BA|C|2185
4W2I|1|BA|C|2186
4W2I|1|BA|G|2187
4W2I|1|BA|G|2188
4W2I|1|BA|U|2189
4W2I|1|BA|G|2190
4W2I|1|BA|A|2191
4W2I|1|BA|A|2192
4W2I|1|BA|A|2193
4W2I|1|BA|U|2194
4W2I|1|BA|A|2195
4W2I|1|BA|C|2196

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA