IL_4W2I_162

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_162 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0556

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4W2I|1|BA|C|2664
4W2I|1|BA|U|2665
4W2I|1|BA|A|2666
4W2I|1|BA|G|2667
4W2I|1|BA|U|2668
4W2I|1|BA|A|2669
4W2I|1|BA|C|2670
*
4W2I|1|BA|G|2675
4W2I|1|BA|G|2676
4W2I|1|BA|A|2677
4W2I|1|BA|C|2678
4W2I|1|BA|C|2679
4W2I|1|BA|G|2680

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain BH

50S Ribosomal Protein L6