IL_4W2I_263
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2I_263 not in the Motif Atlas
- Homologous match to IL_7RQB_027
- Geometric discrepancy: 0.1023
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4W2I|1|DA|U|858
4W2I|1|DA|G|859
4W2I|1|DA|U|860
4W2I|1|DA|A|861
4W2I|1|DA|G|862
*
4W2I|1|DA|C|915
4W2I|1|DA|G|916
4W2I|1|DA|A|917
4W2I|1|DA|A|918
4W2I|1|DA|G|919
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain D0
- 50S Ribosomal Protein L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DQ
- 50S Ribosomal Protein L16
- Chain DZ
- 50S Ribosomal Protein L25
Coloring options: