IL_4W2I_273

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_273 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1004

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

4W2I|1|DA|C|1004
4W2I|1|DA|C|1005
4W2I|1|DA|C|1006
4W2I|1|DA|C|1007
4W2I|1|DA|C|1008
4W2I|1|DA|A|1009
4W2I|1|DA|A|1010
4W2I|1|DA|G|1011
*
4W2I|1|DA|C|1150
4W2I|1|DA|G|1151

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DN

50S Ribosomal Protein L13

Chain DU

50S Ribosomal Protein L20