IL_4W2I_324
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAG*CGGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4W2I_324 not in the Motif Atlas
- Geometric match to IL_7RQB_088
- Geometric discrepancy: 0.3102
- The information below is about IL_7RQB_088
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4W2I|1|DA|C|2297
4W2I|1|DA|A|2298
4W2I|1|DA|G|2299
*
4W2I|1|DA|C|2317
4W2I|1|DA|G|2318
4W2I|1|DA|G|2319
4W2I|1|DA|A|2320
4W2I|1|DA|G|2321
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CX
- Transfer RNA; tRNA
- Chain D0
- 50S Ribosomal Protein L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DG
- 50S Ribosomal Protein L5
- Chain DS
- 50S Ribosomal Protein L18
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