IL_4W2I_345

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGG*CGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W2I_345 not in the Motif Atlas

Homologous match to IL_4WF9_107

Geometric discrepancy: 0.2638

The information below is about IL_4WF9_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

4W2I|1|DA|G|2843
4W2I|1|DA|G|2844
4W2I|1|DA|G|2845
*
4W2I|1|DA|C|2871
4W2I|1|DA|G|2872
4W2I|1|DA|A|2873
4W2I|1|DA|C|2874

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain DE

50S Ribosomal Protein L3

Chain DR

50S Ribosomal Protein L17

Chain DT

50S Ribosomal Protein L19