IL_4W4G_020

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_020 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.0967

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4W4G|1|QA|G|450
4W4G|1|QA|A|451
4W4G|1|QA|A|452
4W4G|1|QA|A|453
4W4G|1|QA|C|454
4W4G|1|QA|C|455
*
4W4G|1|QA|G|477
4W4G|1|QA|A|478
4W4G|1|QA|C|479
4W4G|1|QA|U|480
4W4G|1|QA|G|481
4W4G|1|QA|A|482
4W4G|1|QA|C|483

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16