3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_024 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.0906
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4W4G|1|QA|U|580
4W4G|1|QA|G|581
4W4G|1|QA|U|582
4W4G|1|QA|A|583
4W4G|1|QA|G|584
*
4W4G|1|QA|U|757
4W4G|1|QA|G|758
4W4G|1|QA|A|759
4W4G|1|QA|G|760
4W4G|1|QA|G|761

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QH
30S ribosomal protein S8
Chain QL
30S ribosomal protein S12
Chain QO
30S ribosomal protein S15
Chain QQ
30S ribosomal protein S17
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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