3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GCCC*GUAAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_055 not in the Motif Atlas
Geometric match to IL_4V88_464
Geometric discrepancy: 0.1169
The information below is about IL_4V88_464
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65718.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4W4G|1|QA|G|1401
4W4G|1|QA|C|1402
4W4G|1|QA|C|1403
4W4G|1|QA|C|1404
*
4W4G|1|QA|G|1497
4W4G|1|QA|U|1498
4W4G|1|QA|A|1499
4W4G|1|QA|A|1500
4W4G|1|QA|C|1501

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QV
Transfer RNA; tRNA
Chain QX
messenger RNA
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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