IL_4W4G_067

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_067 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1401

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4W4G|1|RA|C|57
4W4G|1|RA|G|58
4W4G|1|RA|U|59
*
4W4G|1|RA|G|68
4W4G|1|RA|C|69
4W4G|1|RA|G|70

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R2

50S ribosomal protein L29

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23