IL_4W4G_084

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4W4G|1|RA|G|801, 4W4G|1|RA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_084 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.051

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4W4G|1|RA|G|674
4W4G|1|RA|A|675
4W4G|1|RA|A|676
4W4G|1|RA|A|677
4W4G|1|RA|C|678
*
4W4G|1|RA|G|799
4W4G|1|RA|A|800
4W4G|1|RA|G|801
4W4G|1|RA|A|802
4W4G|1|RA|U|803
4W4G|1|RA|A|804
4W4G|1|RA|G|805
4W4G|1|RA|C|806

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15