IL_4W4G_087

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_087 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0624

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4W4G|1|RA|U|703
4W4G|1|RA|G|704
4W4G|1|RA|A|705
4W4G|1|RA|A|706
4W4G|1|RA|G|707
*
4W4G|1|RA|U|724
4W4G|1|RA|G|725
4W4G|1|RA|G|726
4W4G|1|RA|A|727
4W4G|1|RA|G|728

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2