IL_4W4G_107

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4W4G|1|RA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_107 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3376

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4W4G|1|RA|C|1043
4W4G|1|RA|G|1044
4W4G|1|RA|A|1045
4W4G|1|RA|A|1046
4W4G|1|RA|G|1047
4W4G|1|RA|A|1048
4W4G|1|RA|C|1049
4W4G|1|RA|A|1050
4W4G|1|RA|G|1051
*
4W4G|1|RA|U|1108
4W4G|1|RA|C|1109
4W4G|1|RA|G|1110
4W4G|1|RA|A|1111
4W4G|1|RA|G|1112

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6