IL_4W4G_151

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGCGUAGGAUAG*CCUG

Length

17 nucleotides

Bulged bases

4W4G|1|RA|G|2112, 4W4G|1|RA|U|2113, 4W4G|1|RA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_151 not in the Motif Atlas

Geometric match to IL_4K27_003

Geometric discrepancy: 0.3688

The information below is about IL_4K27_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

4W4G|1|RA|C|2108
4W4G|1|RA|U|2109
4W4G|1|RA|G|2110
4W4G|1|RA|C|2111
4W4G|1|RA|G|2112
4W4G|1|RA|U|2113
4W4G|1|RA|A|2114
4W4G|1|RA|G|2115
4W4G|1|RA|G|2116
4W4G|1|RA|A|2117
4W4G|1|RA|U|2118
4W4G|1|RA|A|2119
4W4G|1|RA|G|2120
*
4W4G|1|RA|C|2178
4W4G|1|RA|C|2179
4W4G|1|RA|U|2180
4W4G|1|RA|G|2181

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QW

Transfer RNA; tRNA