IL_4W4G_191

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4W4G|1|XA|U|244, 4W4G|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_191 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0665

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

4W4G|1|XA|C|242
4W4G|1|XA|A|243
4W4G|1|XA|U|244
4W4G|1|XA|C|245
4W4G|1|XA|A|246
4W4G|1|XA|G|247
*
4W4G|1|XA|C|277
4W4G|1|XA|G|278
4W4G|1|XA|A|279
4W4G|1|XA|C|280
4W4G|1|XA|G|281
4W4G|1|XA|A|282
4W4G|1|XA|C|283
4W4G|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17