IL_4W4G_212

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_212 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0665

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

4W4G|1|XA|G|774
4W4G|1|XA|G|775
4W4G|1|XA|G|776
4W4G|1|XA|A|777
4W4G|1|XA|G|778
*
4W4G|1|XA|U|804
4W4G|1|XA|C|805

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YD

50S ribosomal protein L2