IL_4W4G_214

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_214 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0776

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4W4G|1|XA|G|887
4W4G|1|XA|G|888
4W4G|1|XA|A|889
4W4G|1|XA|G|890
4W4G|1|XA|U|891
4W4G|1|XA|A|892
4W4G|1|XA|C|893
4W4G|1|XA|G|894
*
4W4G|1|XA|U|905
4W4G|1|XA|G|906
4W4G|1|XA|A|907
4W4G|1|XA|A|908
4W4G|1|XA|A|909
4W4G|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17