IL_4W4G_238

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

4W4G|1|XA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_238 not in the Motif Atlas

Homologous match to IL_5J7L_364

Geometric discrepancy: 0.545

The information below is about IL_5J7L_364

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4W4G|1|XA|C|1407
4W4G|1|XA|A|1408
4W4G|1|XA|C|1409
*
4W4G|1|XA|G|1491
4W4G|1|XA|A|1492
4W4G|1|XA|A|1493
4W4G|1|XA|G|1494

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XX

messenger RNA

Chain XY

Host inhibition of growth B

Chain YA

Large subunit ribosomal RNA; LSU rRNA