3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
4W4G|1|YA|A|1379
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4W4G_298 not in the Motif Atlas
Homologous match to IL_7RQB_052
Geometric discrepancy: 0.0378
The information below is about IL_7RQB_052
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
20

Unit IDs

4W4G|1|YA|C|1351
4W4G|1|YA|U|1352
4W4G|1|YA|A|1353
4W4G|1|YA|A|1354
4W4G|1|YA|G|1355
*
4W4G|1|YA|C|1376
4W4G|1|YA|G|1377
4W4G|1|YA|A|1378
4W4G|1|YA|A|1379
4W4G|1|YA|G|1380

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YD
50S ribosomal protein L2

Coloring options:


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