IL_4W4G_370

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CUAC

Length

7 nucleotides

Bulged bases

4W4G|1|RA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W4G_370 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3603

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4W4G|1|RA|G|880
4W4G|1|RA|G|881
4W4G|1|RA|G|882
*
4W4G|1|RA|C|894
4W4G|1|RA|U|895
4W4G|1|RA|A|896
4W4G|1|RA|C|897

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RZ

50S ribosomal protein L25