IL_4W92_002

3D structure

PDB id

4W92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CAUUGCACUAG*CAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4W92_002 not in the Motif Atlas

Homologous match to IL_4W90_003

Geometric discrepancy: 0.2241

The information below is about IL_4W90_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W92|1|C|C|33
4W92|1|C|A|34
4W92|1|C|U|35
4W92|1|C|U|36
4W92|1|C|G|37
4W92|1|C|C|38
4W92|1|C|A|39
4W92|1|C|C|40
4W92|1|C|U|41
4W92|1|C|A|57
4W92|1|C|G|58
*
4W92|1|C|C|99
4W92|1|C|A|100
4W92|1|C|G|101

Current chains

Chain C

C-di-AMP ribsoswitch

Nearby chains

Chain B

U1 small nuclear ribonucleoprotein A