IL_4WCE_008

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

GAGAACUG*CUUAGUACC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_008 not in the Motif Atlas

Homologous match to IL_4WF9_008

Geometric discrepancy: 0.066

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84694.2

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4WCE|1|X|G|190
4WCE|1|X|A|191
4WCE|1|X|G|192
4WCE|1|X|A|193
4WCE|1|X|A|194
4WCE|1|X|C|195
4WCE|1|X|U|196
4WCE|1|X|G|197
*
4WCE|1|X|C|204
4WCE|1|X|U|205
4WCE|1|X|U|206
4WCE|1|X|A|207
4WCE|1|X|G|208
4WCE|1|X|U|209
4WCE|1|X|A|210
4WCE|1|X|C|211
4WCE|1|X|C|212

Current chains

Chain X

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28