IL_4WCE_023

3D structure

PDB id

4WCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus

Experimental method

X-RAY DIFFRACTION

Resolution

3.53 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4WCE_023 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1022

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4WCE|1|X|U|748
4WCE|1|X|G|749
4WCE|1|X|A|750
4WCE|1|X|A|751
4WCE|1|X|G|752
*
4WCE|1|X|U|769
4WCE|1|X|G|770
4WCE|1|X|G|771
4WCE|1|X|A|772
4WCE|1|X|G|773

Current chains

Chain X

23S rRNA

Nearby chains

Chain A

50S ribosomal protein L2