IL_4WCE_038
3D structure
- PDB id
- 4WCE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of the large ribosomal subunit of Staphylococcus aureus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.53 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 4WCE|1|X|A|1171, 4WCE|1|X|U|1174, 4WCE|1|X|C|1178
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4WCE_038 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.057
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4WCE|1|X|G|1068
4WCE|1|X|G|1069
4WCE|1|X|A|1070
4WCE|1|X|A|1071
4WCE|1|X|A|1072
4WCE|1|X|A|1073
4WCE|1|X|G|1074
*
4WCE|1|X|C|1168
4WCE|1|X|G|1169
4WCE|1|X|A|1170
4WCE|1|X|A|1171
4WCE|1|X|A|1172
4WCE|1|X|A|1173
4WCE|1|X|U|1174
4WCE|1|X|G|1175
4WCE|1|X|U|1176
4WCE|1|X|A|1177
4WCE|1|X|C|1178
4WCE|1|X|C|1179
4WCE|1|X|G|1180
4WCE|1|X|G|1181
4WCE|1|X|G|1182
4WCE|1|X|G|1183
4WCE|1|X|C|1184
Current chains
- Chain X
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L36
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
- Chain J
- 50S ribosomal protein L16
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: